Research

Research Mission

My research sits at the intersection of plant biotechnology, molecular biology, and crop resilience. We use genome editing, single-cell genomics, and synthetic biology approaches to understand how plants respond to environmental stress and to develop practical solutions for food security and climate adaptation.

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Active Projects
3
Total Projects
4
Grants
Research Interests

The core themes that guide our work and shape our collaborations.

Rice Domestication for Salt Tolerance

One of my key research interests revolves around enhancing the salt tolerance of rice, a staple food for a significant portion of the world's population. Through a multidisciplinary approach, I aim to decipher the genetic and physiological basis of salt tolerance in rice varieties. By identifying and manipulating key genes involved in this trait, my research strives to contribute to the development of salt-resistant rice varieties that can thrive in saline soils, thereby bolstering food security in regions affected by salinity.

CO2 Fixation Using Biological Engineering

Addressing the pressing issue of climate change, my research delves into the realm of biological engineering for carbon dioxide (CO2) fixation. With a focus on harnessing the potential of plants and microorganisms, I aim to develop novel strategies for efficient CO2 sequestration. By leveraging the inherent biological processes of photosynthesis and exploring biotechnological interventions, my work aims to mitigate the impact of greenhouse gas emissions and contribute to the development of sustainable solutions for a rapidly changing climate.

Fixation of Hybrid Vigor in Plants

Hybrid vigor, or heterosis, represents a phenomenon where the offspring of genetically diverse parents exhibit superior traits compared to their parents. My research explores the mechanisms underlying hybrid vigor in plants, with a specific emphasis on understanding the genetic and epigenetic factors that contribute to this phenomenon. By unraveling the complexities of hybrid vigor, I seek to develop strategies for stabilizing and fixing these beneficial traits in plant populations, ultimately enhancing crop yields and agricultural productivity.

Epigenetic Regulation of Stress Response in Crops

Epigenetic modifications — including DNA methylation, histone remodeling, and small RNA pathways — play a critical role in how plants perceive and adapt to environmental stress without altering the underlying DNA sequence. My research investigates the epigenetic regulatory networks that govern stress memory and transgenerational inheritance of stress tolerance in major crop species. By mapping dynamic epigenetic changes under drought, heat, and salinity conditions, I aim to identify stable epi-marks that can be leveraged in breeding programs to develop crops with enhanced and heritable stress resilience.

Research Projects

Current and completed projects at the heart of our research program.

Active

Root regeneration atlas

2023-Current

Single-cell mapping of cellular reprogramming during root tip regeneration in Arabidopsis.

Rice Domestication for Salt Tolerance
Spatial transcriptomics of leaf development
Completed

Spatial transcriptomics of leaf development

2022 – 2023

Mapping gene expression dynamics across developing leaf tissue using spatial transcriptomics.

CO2 Fixation Using Biological Engineering
Upcoming

Drought stress response atlas in cereal crops

2027

Single-cell and bulk transcriptomic profiling of drought-responsive gene networks in rice and wheat.

Fixation of Hybrid Vigor in Plants
Funding & Grants

Competitive grants and awards that support our research program.

Enhancing Rice Yield and Resilience to Biotic and Abiotic Stresses Using Genome Editing

Bangladesh Academy of Sciences and United States Department of Agriculture· BAS-USDA Commissioned Project· 2025-2028

Improving Rice Productivity in Phosphorus-Deficient Soils Using Microbial and Genetic Innovations

The World Bank and Bangladesh Government· Higher Education Acceleration and Transformation Project· 2025-2028

Screening for phosphorus use efficient rice

Research and Training Center, Patuakhali Science and Technology University· Research· 2024-2025

Identifying and profile apomictic genes in Bangladeshi rice landraces

$640,000
University Internal Fund· Research· 2023-2024

Investigators: Dr. Mahmudul Hasan, Dr. Nesar Uddin

Leaf development involves coordinated growth and differentiation across multiple cell layers and tissue types. Using spatial transcriptomic profiling, we generated a high-resolution map